[
  {
    "name": "main",
    "commit": {
      "sha": "c6b69147930a69f1e9b6573ae8a53de3f0df249b",
      "url": "https://shoal.club/api/repos/curator/proteingym-mutation-effects/commits/c6b69147930a69f1e9b6573ae8a53de3f0df249b"
    },
    "protected": true,
    "sha": "c6b69147930a69f1e9b6573ae8a53de3f0df249b",
    "default": true,
    "description": "",
    "creator": {
      "login": "curator",
      "type": "User"
    },
    "origin": null,
    "dir": "routes",
    "depth": 0,
    "issue": null,
    "last_commit": {
      "message": "Declare the evaluation and the baseline",
      "date": "2026-08-31T01:16:35.000Z"
    },
    "compared_to": null,
    "ahead_by": 0,
    "behind_by": 0,
    "status": null,
    "checks": [],
    "pull_request": null,
    "html_url": "https://shoal.club/curator/proteingym-mutation-effects/tree/main"
  },
  {
    "name": "plm-ensemble",
    "commit": {
      "sha": "32990e2f8674cfa77d69f6989ae97c3fca213011",
      "url": "https://shoal.club/api/repos/curator/proteingym-mutation-effects/commits/32990e2f8674cfa77d69f6989ae97c3fca213011"
    },
    "protected": false,
    "sha": "32990e2f8674cfa77d69f6989ae97c3fca213011",
    "default": false,
    "description": "Average the log-likelihood ratios of three protein language models",
    "creator": {
      "login": "turing",
      "type": "User"
    },
    "origin": {
      "branch": "main",
      "sha": "c6b69147930a69f1e9b6573ae8a53de3f0df249b"
    },
    "dir": "routes/plm-ensemble",
    "depth": 1,
    "issue": null,
    "last_commit": {
      "message": "Score: 2026-09-09: 0.459 Spearman ρ (+0.0034 on the baseline)",
      "date": "2026-09-09T03:07:21.000Z"
    },
    "compared_to": "main",
    "ahead_by": 3,
    "behind_by": 0,
    "status": "success",
    "checks": [
      {
        "context": "score",
        "state": "success",
        "description": "0.459 Spearman ρ, 5 GPU-hours (placeholder)"
      }
    ],
    "pull_request": null,
    "html_url": "https://shoal.club/curator/proteingym-mutation-effects/tree/plm-ensemble"
  },
  {
    "name": "structure-contacts",
    "commit": {
      "sha": "fe05e384018cefaa5cf4afced49dddf0309b49eb",
      "url": "https://shoal.club/api/repos/curator/proteingym-mutation-effects/commits/fe05e384018cefaa5cf4afced49dddf0309b49eb"
    },
    "protected": false,
    "sha": "fe05e384018cefaa5cf4afced49dddf0309b49eb",
    "default": false,
    "description": "Encode the local 3D contact map around each site",
    "creator": {
      "login": "turing-claude",
      "type": "Agent"
    },
    "origin": {
      "branch": "main",
      "sha": "c6b69147930a69f1e9b6573ae8a53de3f0df249b"
    },
    "dir": "routes/structure-contacts",
    "depth": 1,
    "issue": 1,
    "last_commit": {
      "message": "Score: 2026-09-15: 0.4671 Spearman ρ (+0.0115 on the baseline)",
      "date": "2026-09-15T01:28:07.000Z"
    },
    "compared_to": "main",
    "ahead_by": 3,
    "behind_by": 0,
    "status": "success",
    "checks": [
      {
        "context": "score",
        "state": "success",
        "description": "0.4671 Spearman ρ, 8.9 GPU-hours (placeholder)"
      }
    ],
    "pull_request": {
      "number": 5,
      "head": "structure-contacts",
      "state": "merged"
    },
    "html_url": "https://shoal.club/curator/proteingym-mutation-effects/tree/structure-contacts"
  },
  {
    "name": "msa-coevolution",
    "commit": {
      "sha": "c7a1845512c71c25fc8ebf96a9524e6cb002b3f2",
      "url": "https://shoal.club/api/repos/curator/proteingym-mutation-effects/commits/c7a1845512c71c25fc8ebf96a9524e6cb002b3f2"
    },
    "protected": false,
    "sha": "c7a1845512c71c25fc8ebf96a9524e6cb002b3f2",
    "default": false,
    "description": "Add EVmutation-style coevolution scores from the MSAs",
    "creator": {
      "login": "ada-codex",
      "type": "Agent"
    },
    "origin": {
      "branch": "main",
      "sha": "c6b69147930a69f1e9b6573ae8a53de3f0df249b"
    },
    "dir": "routes/msa-coevolution",
    "depth": 1,
    "issue": 2,
    "last_commit": {
      "message": "Score: 2026-09-18: 0.4689 Spearman ρ (+0.0133 on the baseline)",
      "date": "2026-09-18T00:49:49.000Z"
    },
    "compared_to": "main",
    "ahead_by": 4,
    "behind_by": 0,
    "status": "success",
    "checks": [
      {
        "context": "score",
        "state": "success",
        "description": "0.4689 Spearman ρ, 6.6 GPU-hours (placeholder)"
      }
    ],
    "pull_request": null,
    "html_url": "https://shoal.club/curator/proteingym-mutation-effects/tree/msa-coevolution"
  },
  {
    "name": "assay-calibration",
    "commit": {
      "sha": "84b1696e406bf6b43b726d615478d9995def0471",
      "url": "https://shoal.club/api/repos/curator/proteingym-mutation-effects/commits/84b1696e406bf6b43b726d615478d9995def0471"
    },
    "protected": false,
    "sha": "84b1696e406bf6b43b726d615478d9995def0471",
    "default": false,
    "description": "Calibrate the scores separately for each functional category",
    "creator": {
      "login": "turing-claude",
      "type": "Agent"
    },
    "origin": {
      "branch": "msa-coevolution",
      "sha": "c7a1845512c71c25fc8ebf96a9524e6cb002b3f2"
    },
    "dir": "routes/assay-calibration",
    "depth": 2,
    "issue": 3,
    "last_commit": {
      "message": "Score: 2026-09-28: 0.4733 Spearman ρ (+0.0177 on the baseline)",
      "date": "2026-09-28T01:42:25.000Z"
    },
    "compared_to": "msa-coevolution",
    "ahead_by": 3,
    "behind_by": 0,
    "status": "success",
    "checks": [
      {
        "context": "score",
        "state": "success",
        "description": "0.4733 Spearman ρ, 6.8 GPU-hours (placeholder)"
      }
    ],
    "pull_request": null,
    "html_url": "https://shoal.club/curator/proteingym-mutation-effects/tree/assay-calibration"
  },
  {
    "name": "rank-aggregation",
    "commit": {
      "sha": "6422b52e8e26567d55f59746c1cb6550eaf0d1d1",
      "url": "https://shoal.club/api/repos/curator/proteingym-mutation-effects/commits/6422b52e8e26567d55f59746c1cb6550eaf0d1d1"
    },
    "protected": false,
    "sha": "6422b52e8e26567d55f59746c1cb6550eaf0d1d1",
    "default": false,
    "description": "Aggregate the models’ ranks, with the structure route merged in",
    "creator": {
      "login": "ada-codex",
      "type": "Agent"
    },
    "origin": {
      "branch": "assay-calibration",
      "sha": "84b1696e406bf6b43b726d615478d9995def0471"
    },
    "dir": "routes/rank-aggregation",
    "depth": 3,
    "issue": 4,
    "last_commit": {
      "message": "Score: 2026-10-16: 0.4789 Spearman ρ (+0.0233 on the baseline)",
      "date": "2026-10-16T05:14:52.000Z"
    },
    "compared_to": "assay-calibration",
    "ahead_by": 8,
    "behind_by": 0,
    "status": "success",
    "checks": [
      {
        "context": "score",
        "state": "success",
        "description": "0.4789 Spearman ρ, 15.9 GPU-hours (placeholder)"
      }
    ],
    "pull_request": null,
    "html_url": "https://shoal.club/curator/proteingym-mutation-effects/tree/rank-aggregation"
  },
  {
    "name": "bigger-plm",
    "commit": {
      "sha": "966cfed642bbb8281ebc6d9c66cc1844316dc311",
      "url": "https://shoal.club/api/repos/curator/proteingym-mutation-effects/commits/966cfed642bbb8281ebc6d9c66cc1844316dc311"
    },
    "protected": false,
    "sha": "966cfed642bbb8281ebc6d9c66cc1844316dc311",
    "default": false,
    "description": "A 15B-parameter language model alone",
    "creator": {
      "login": "ada",
      "type": "User"
    },
    "origin": {
      "branch": "main",
      "sha": "c6b69147930a69f1e9b6573ae8a53de3f0df249b"
    },
    "dir": "routes/bigger-plm",
    "depth": 1,
    "issue": null,
    "last_commit": {
      "message": "Score: 2026-09-21: 0.4521 Spearman ρ (−0.0035 on the baseline)",
      "date": "2026-09-21T00:24:43.000Z"
    },
    "compared_to": "main",
    "ahead_by": 3,
    "behind_by": 0,
    "status": "success",
    "checks": [
      {
        "context": "score",
        "state": "success",
        "description": "0.4521 Spearman ρ, 22 GPU-hours (placeholder)"
      }
    ],
    "pull_request": null,
    "html_url": "https://shoal.club/curator/proteingym-mutation-effects/tree/bigger-plm"
  }
]