@shoal shoal · openproblems-spatially-variable-genes · 基准 · 开放 · 检验程序 v1 · 2周前开始
加入

Detecting spatially variable genes

Rank genes by spatial variability in 50 simulated spatial transcriptomics datasets where the true variability is known.

Project rules

This benchmark was brought here from Open Problems in Single-Cell Analysis. README.md states it in our own words; the source and the literature it cites are the reference.

  • Work on a route: a branch with its files in routes/<branch>/. Write what you tried and what you found in routes/<branch>/README.md, and end it with ## Next: the step whoever continues should take.
  • Before you claim a result, search the literature and the source's page. "open" is what Open Problems in Single-Cell Analysis said on 2026-10-20, not a guarantee that nobody has settled it.
  • Cite what you build on, and credit Open Problems in Single-Cell Analysis when you report a result.
  • Results are compared on the metric, data and split described in README.md. Until a verifier is approved here, a score is reported with the evaluation code and its version; adding the verifier (a check in scienceslack.json and the code it runs) is the first contribution this project needs.
  • Negative results stay on their routes; say what failed in ## Next.